Papers - Sumi Tomonari

1. A neural network model that generates salt concentration memory-dependent chemotaxis in Caenorhabditis elegans

   Masakatsu Hironaka, Tomonari Sumi，elife，vol.14，(p.RP104456-1 ～ RP104456-42)，2025.02

   

2. Mechanism of polymer molecular weight-dependent suppression and promotion of liquid-liquid phase separation of a protein solution by the addition of polymer

   Yoshihiro Osaka, Ryuichi Okamoto, Tomonari Sumi, Kenichiro Koga, Hiroshi Imamura, Tsuyoshi Shirai, Yasuhiro Isogai，The Journal of Chemical Physics，vol.162，(p.051101-1 ～ 051101-8)，2025.02

   

3. The nature of the hydrophobic interaction varies as the solute size increases from methane's to C60's

   Hidefumi Naito, Tomonari Sumi, Kenichiro Koga，The Journal of Chemical Physics，vol.161，(p.214501-1 ～ 214501-15)，2024.12

   

4. Vaccine and antiviral drug promise for preventing post-acute sequelae of COVID-19, and their combination for its treatment

   Tomonari Sumi, Kouji Harada，Frontiers in Immunology，vol.15，(p.1329162-1. ～ 1329162-20.)，2024.08

   

5. Pair Potential between Poloxamer 407 Micelles in 14 wt% Aqueous Solution Clarifying the So-Gel-Sol Transition by Temperature Rise

   Takeshi Morita, Yusuke Torii, Hiroshi Imamura, Teruki Kadota, Fumie Sakuma, Kenjirou Higashi, Tomonari Sumi，The Journal of Physical Chemistry Letters，vol.15，(31)，(p.7909 ～ 7915)，2024.07

   

6. How do water-mediated interactions and osmotic second virial coefficients vary with particle size?

   Hidefumi Naito, Tomonari Sumi, Kenichiro Koga，Faraday Discussions，vol.249，(p.440 ～ 452)，2024.06

   

7. Solvation free energies of alcohols in water: temperature and pressure dependences

   Aoi Taira, Ryuichi Okamoto, Tomonari Sumi, Kenichiro Koga，Physical Chemistry Chemical Physics，vol.25，(45)，(p.31107 ～ 31117)，2023.10

   

8. Molecular mechanism of the common and opposing co-solvent effects of fluorinated alcohol and urea on a coiled coil protein

   Noa Nakata, Ryuichi Okamoto, Tomonari Sumi, Kenichiro Koga, Takeshi Morita, Hiroshi Imamura，Protein Science，vol.32，(10)，(p.e4763-1 ～ e4763-15)，2023.08

   

9. Muscarinic acetylcholine receptor-dependent and NMDA receptor-dependent LTP and LTD share the common AMPAR trafficking pathway

   Tomonari Sumi, Kouji Harada，iScience，vol.26，(3)，(p.106133-1 ～ 106133-24)，2023.03

   

10. Immune response to SARS-CoV-2 in severe disease and long COVID-19

    Tomonari Sumi, Kouji Harada，iScience ，vol.25，(8)，(p.104723-1 ～ 104723-19)，2022.08

    

11. Osmotic second virial coefficients for hydrophobic interactions as a function of solute size

    Hidefumi Naito, Ryuichi Okamoto, Tomonari Sumi, Kenichiro Koga，The Journal of Chemical Physics，vol.156，(22)，(p.221104-1 ～ 221104-6)，2022.06

    

12. Improvement of Protein Solubility in Macromolecular Crowding during Myoglobin Evolution

    Yasuhiro Isogai, Hiroshi Imamura, Tomonari Sumi, Tsuyoshi Shirai，Biochemistry，vol.61，(15)，(p.1543 ～ 1547)，2022.06

    

13. Kinetics of the ancestral carbon metabolism pathways in deep-branching bacteria and archaea

    Tomonari Sumi, Kouji Harada，Communications Chemistry，vol.4，(1)，(p.149-1 ～ 149-9)，2021.12

    

14. Water-mediated interactions destabilize proteins

    Tomonari Sumi, Hiroshi Imamura，Protein Science，vol.30，(10)，(p.2132 ～ 2143)，2021.08

    

15. Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals

    Yasuhiro Isogai, Hiroshi Imamura, Setsu Nakae, Tomonari Sumi, Ken-ichi Takahashi, Tsuyoshi Shirai，iScience，vol.24，(8)，(p.102920-1 ～ 102920-22)，2021.08

    

16. Ion Size Dependences of the Salting-Out Effect: Reversed Order of Sodium and Lithium Ions

    Hiroyuki Katsuto, Ryuichi Okamoto, Tomonari Sumi, Kenichiro Koga，The Journal of Physical Chemistry B，vol.125，(23)，(p.6296 ～ 6305)，2021.06

    

17. A mathematical study on the effects of a combination of an immune checkpoint inhibitor and a mutagen for anti-HIV-1 therapy

    Kouji Harada, Tomonari Sumi，Artificial Life and Robotics，vol.26，(2)，(p.210 ～ 215)，2021.05

    

18. Unveiling the Interaction Potential Surface between Drug-Entrapped Polymeric Micelles Clarifying the High Drug Nanocarrier Efficiency

    Takeshi Morita, Sayaka Mukaide, Ziqiao Chen, Kenjirou Higashi, Hiroshi Imamura, Kunikazu Moribe, Tomonari Sumi，Nano Letters，vol.21，(3)，(p.1303 ～ 1310)，2021.02

    

19. Two different regimes in alcohol-induced coil-helix transition: effects of 2,2,2-trifluoroethanol on proteins being either independent of or enhanced by solvent structural fluctuations

    Hiroyo Ohgi, Hiroshi Imamura, Tomonari Sumi, Keiko Nishikawa, Yoshikata Koga, Peter Westh, Takeshi Morita，Physical Chemistry Chemical Physics，vol.23，(10)，(p.5760 ～ 5772)，2021.01

    

20. Mechanism underlying hippocampal long-term potentiation and depression based on competition between endocytosis and exocytosis of AMPA receptors

    Tomonari Sumi, Kouji Harada，Scientific Reports，vol.10，(p.14711-1 ～ 14711-14)，2020.12